package data;

public class Constant {
    //GISTIC1.0数据
    public static final String IMPORT_PATH_GISTIC1_SEGMENTATIONFILE = "./data/realData/gistic1Data/segmentationfile.txt";
    public static final String IMPORT_PATH_GISTIC1_MARKERSFILE = "./data/realData/gistic1Data/markersfile.txt";

    public static final String EXPORT_PATH_GISTIC1_SEGMENT = "./data/generatedData/gistic1Data/segment.tsv";
    public static final String EXPORT_PATH_GISTIC1_PROBE_LOCATIONS = "./data/generatedData/gistic1Data/Probe_Locations.txt";
    public static final String EXPORT_PATH_GISTIC1_GENES = "./data/generatedData/gistic1Data/genes.txt";
    public static final String EXPORT_PATH_GISTIC1_CYtOBAND = "./data/generatedData/gistic1Data/cytoBand.txt";


    //GISTIC2.0数据
    public static final String IMPORT_PATH_GISTIC2_SEGMENTATIONFILE = "./data/realData/gistic2Data/segmentationfile.txt";
    public static final String IMPORT_PATH_GISTIC2_MARKERSFILE = "./data/realData/gistic2Data/markersfile.txt";

    public static final String EXPORT_PATH_GISTIC2_SEGMENTATIONFILE = "./data/generatedData/gistic2Data/segmentationfile.txt";
    public static final String EXPORT_PATH_GISTIC2_MARKERSFILE = "./data/generatedData/gistic2Data/markersfile.txt";
    public static final String EXPORT_PATH_GISTIC2_CNVFILE = "./data/generatedData/gistic2Data/cnvfile.txt";
    public static final String EXPORT_PATH_GISTIC2_ARRAYLISTFILE = "./data/generatedData/gistic2Data/arraylistfile.txt";
    public static final String EXPORT_PATH_GISTIC2_REFGENEFILE = "./data/generatedData/gistic2Data/refgenefiles.tsv";


    //RUBIC数据
    public static final String IMPORT_PATH_RUBIC_MARKERS = "./data/realData/rubicData/markers.tsv";
    public static final String IMPORT_PATH_RUBIC_SEGCNA = "./data/realData/rubicData/segcna.tsv";
    public static final String IMPORT_PATH_RUBIC_GENES = "./data/realData/rubicData/genes.tsv";

    public static final String EXPORT_PATH_RUBIC_MARKERS = "./data/generatedData/rubicData/markers.tsv";
    public static final String EXPORT_PATH_RUBIC_SEGCNA = "./data/generatedData/rubicData/segcna.tsv";
    public static final String EXPORT_PATH_RUBIC_GENES = "./data/generatedData/rubicData/genes.tsv";

    //JISTIC数据
    public static final String EXPORT_PATH_JISTIC_SEGMENT = "./data/generatedData/jisticData/segment.tsv";
    public static final String EXPORT_PATH_JISTIC_PROBE_LOCATIONS = "./data/generatedData/jisticData/Probe_Locations.txt";
    public static final String EXPORT_PATH_JISTIC_GENES = "./data/generatedData/jisticData/genes.txt";

    //SAIC数据
    public static final String EXPORT_PATH_SAIC_MARKERS = "./data/generatedData/saicData/markers.txt";
    public static final String EXPORT_PATH_SAIC_GENE_REFERENCE = "./data/generatedData/saicData/geneReference.txt";

    //配置文件
    public static final String IMPORT_PATH_SETTINGS = "./setting/settings.xml";

    //测试数据
    public static final String EXPORT_PATH_TEST = "./data/testData/test.txt";

    //静态参数
    public static final int FLAG_THRESHOLD = 200; //不知多少，人为随意设
    public static final double DEFAULT_POSITIVE_PASSENGERS_VALUE = 0.58; //扩增乘客值
    public static final double DEFAULT_NEGATIVE_PASSENGERS_VALUE = -1; //缺失乘客值
}
